rs27362304 SNP Detail

Summary

• ID
  rs27362304
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:149774779 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGCACAGG CAACAATGAA
  TGAAACCAGA GCTAAGCTTT GACATCACGC TTTGGAATGG GGGTGGTGTT CTTATCTTAT
  GTTTCACTGG CAGAGGTGTC ACCTCTTCCC AGGGTACTAG GAACCCTAGA TAAATGACAT
  AGGTCTAGGA ATGGTGGCCT GTGTGTCCAT ACCAGAGGCC AGCTTCATCA AACCTGCTAC
  K
  GATCCCAACC AGATTCCTGG GCTAGTTGAG GCAGGCTCAG ATGAGCTTGG CCTCTAAGGT
  CTCCAAAGGT ACTGTCCAGA ATGCAGATGA GGGTACATGA GGCTTTGGAG AAAGACTTGG
  GTTAGGAATC TATGGTGAGT GCCATCTGCT CCCACCTATA TAAGACCACC CTGGATGATC
  TCTGCTTCTT CACATAGTCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37570423	NES08921960	PERLEGEN	MM_PANEL2	f	SNP	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27362304					SNP	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37570423	NES08921960	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:149774779 () rs orientation: forward

Symbol	Name	Function Class
Rr567007	regulatory region 567007	661 bp proximal
Rr567008	regulatory region 567008	1182 bp proximal
Syndig1	synapse differentiation inducing 1	Intron