rs27362297 SNP Detail

Summary

• ID
  rs27362297
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:149776623 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGGTATGG GCTGTGCAGA
  TCAAATTAGA AACTCGTGTT TCCAATCTAG GTTGAGAGGA GACATAATCT CCACATTTTG
  CTGAGTGTCT GCTGTAAGAC AGTTAATGCA CACACTTTAT CTTCTTTAAT CCCTCCAATA
  AGTCTAAAAC TAAAAAAAGT TAATATCTTC ATTGAAATGG AAAAGAACGT TTCAAGGTTT
  M
  AAACAACTTC CAGATCTCAT AAAGGCAGAA AGCACAGAGG TATGTGGGGT CAAATACTGG
  GCACTTCTAG CCTTTAAAAT GGATCCTGCT GCATGAACCC CAGCCTCCAC CACAACAGGG
  GATTTGTGAC CCTCGTTTCC ATGAGATCAC TTGGATGTTC ACACTGAATG CTGAAGGAAT
  CAGCCAGTAA ACTTGTTTTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37570416	NES08921967	PERLEGEN	MM_PANEL2	f	SNP	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27362297					SNP	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37570416	NES08921967	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:149776623 () rs orientation: forward

Symbol	Name	Function Class
Rr567007	regulatory region 567007	767 bp distal
Rr567008	regulatory region 567008	143 bp distal
Syndig1	synapse differentiation inducing 1	Intron