rs27362128 SNP Detail

Summary

• ID
  rs27362128
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:101468487 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGCAGAGA GCCATGAATG
  CTTGGGTAGC TCACTTTCTC CCGGTTCACC CAGGCAAGGA TCCCACACGA GGGAACAATG
  CCACTGACAG AGACCCATTG GTTAGCCCAA TGAAAGGATG CTCCCACAGG CACGGCCAGA
  GGCCTGACTC TCGGATGATG CTATTTCTCC AGTTGACAAC TGAGACTAAG TATCACAGTC
  R
  CCAAGTTCAT TTTTATGTCC TTCAAATAAG GGAGATAATG TTAAGTATGG GCAGTCAACA
  TAATTGATAT GAGATGATAT AGCACCAATA TAAATCACAA CGCCTGTTAT TTTCAGATCT
  TAAACTTTTA TTCCAAATAC TTAAACACAA AATTGTGAAA TCAATCATAA TGCTAAAAAG
  TAAAATATGA AAATAAGTAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37581547	NES09079637	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27362128					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37581547	NES09079637	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:101468487 () rs orientation: forward

Symbol	Name	Function Class
Rag1	recombination activating 1	140 bp downstream
Rr561526	regulatory region 561526	1469 bp proximal
Tssr25364	transcription start site region 25364	1960 bp downstream