rs27362127 SNP Detail

Summary

• ID
  rs27362127
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:101468569 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGACAGAG ACCCATTGGT
  TAGCCCAATG AAAGGATGCT CCCACAGGCA CGGCCAGAGG CCTGACTCTC GGATGATGCT
  ATTTCTCCAG TTGACAACTG AGACTAAGTA TCACAGTCAC CAAGTTCATT TTTATGTCCT
  TCAAATAAGG GAGATAATGT TAAGTATGGG CAGTCAACAT AATTGATATG AGATGATATA
  R
  CACCAATATA AATCACAACG CCTGTTATTT TCAGATCTTA AACTTTTATT CCAAATACTT
  AAACACAAAA TTGTGAAATC AATCATAATG CTAAAAAGTA AAATATGAAA ATAAGTATTT
  GAACTCATGT TCTTCCATTT GAAAACATTT AACATGGAAA TATAGGTCCT CAAATCAAAT
  AGTACATTGC ATCCTGGTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37581546	NES09079638	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	G	G	G		G	G	G	A		G	G	G	G		G
ss45327915	mCV22318659	ABI	CRAMUS_MOUSE	f	SNP		G	A					G
ss320429653	CHEV_2_101478381	CHEVERUD	SCREENING_POP	f	SNP													A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27362127					SNP	G	G	A	G	G	G	G	G	G	G	G	A	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37581546	NES09079638	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:101468569 () rs orientation: forward

Symbol	Name	Function Class
Rag1	recombination activating 1	58 bp downstream
Rr561526	regulatory region 561526	1387 bp proximal
Tssr25364	transcription start site region 25364	1878 bp downstream