rs27362125 SNP Detail

Summary

• ID
  rs27362125
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:101469399 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAATATTCC TCAGAGGTAT
  ACACTTGCCT AGCATGTGCA AGACCCTGGC TTAGTCCTCC AATCCTGCCT CCTAACTGTG
  TAGAATTTGA AATCTGTGTG AAATCATATG AAACCCATAC TTTCAACCCC ACTCCCCCCC
  CCAAAATCTT TATTTTCATG CATACTTTGT GAAAACAAAT TGAGACAAAA TTAAATTCCT
  S
  TCCACCTGAG AGAGAAAGAC ATCTTTCCCC ACTGCTCTGG CATCTGTGTG CATGCTTTTA
  ATCCCAAGAC ACTTCTTAAC CTCTCACCCA CCATTCATCA ATTTTCATCA GCTACAGTCA
  CTGGTCCCCA CAGTGCGCGG CAGAAGGCTG GCACGTAGAC CTGTAGAAAC AGGCTTCCAG
  TTTCAGAGCA GAAAAAAATG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37581544	NES09079545	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27362125					SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37581544	NES09079545	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:101469399 () rs orientation: forward

Symbol	Name	Function Class
Rag1	recombination activating 1	mRNA-UTR
Rr561526	regulatory region 561526	557 bp proximal
Tssr25364	transcription start site region 25364	1048 bp downstream
Tssr25365	transcription start site region 25365	1172 bp downstream