rs27362122 SNP Detail

Summary

• ID
  rs27362122
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:101469957 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTGTGCAG TCTCCACACT
  GAGGGAAACA AATAGCCATA GGCGATAGTC TACATAATGA AATCCTGTGG CCAGGTGCTC
  CAGAGGTTTA TCAGAATGTG ATCTGATTAG GAGAGTCAGG GGAAGGATGT GCTATAAATC
  AAGCCCAGAG TCAAATGCTT CTGAGATTGT CCTACCATCC TAGCAAGGGG AATTTAATAT
  Y
  GGGCAGTATT TACAGTGCTG CCAACTGACT AACCGAGTGG ATGGGAAGGC ATCTACCAAA
  AGCGCCAGCA TGCTCCAGGG AGTAGGAGGG TGGCAGGAAC TTAGCTGTTT ATTAGTGCAC
  AGACATCTGT AAGGATTAAA TGGGATGAAA GGACTGGTGG TTTAGAAGCC TATTAGTTTG
  CAAATGACAA AACAGAGAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37581541	NES09079550	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	C	C	C	C	C	T		C		C	C		C
ss147079133	ENSMUSSNP3107107	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T					C					T
ss320429672	CHEV_2_101479769	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27362122					SNP	C	C	T	C	C	C	C	C	C	T	T	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37581541	NES09079550	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:101469957 () rs orientation: forward

Symbol	Name	Function Class
Rag1	recombination activating 1	mRNA-UTR
Rr561526	regulatory region 561526	within coordinates
Tssr25364	transcription start site region 25364	490 bp downstream
Tssr25365	transcription start site region 25365	614 bp downstream
Tssr25366	transcription start site region 25366	1655 bp downstream
Tssr25367	transcription start site region 25367	1951 bp downstream