rs27362119 SNP Detail

Summary

• ID
  rs27362119
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:101470247 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGCAGGAA CTTAGCTGTT
  TATTAGTGCA CAGACATCTG TAAGGATTAA ATGGGATGAA AGGACTGGTG GTTTAGAAGC
  CTATTAGTTT GCAAATGACA AAACAGAGAG GGTTTTTAGG ATAATACTTA AGTGTGTGTA
  TGTTTTTGAC AACTAAATTA CGAATGTCTT CGATGTGCTC CATGCAGAAA GCAAAGAAAA
  Y
  GGCTGCATCT TTCAATAGAA AGCACTAAAT TCAATCCCTG CCTATGCACC AAACATGTGC
  CATTTAGGAT AATGTCATTT TTGCACACTT GACAACTAAA TTACAAAGCT CTTTGATATA
  CTGTGTATGA AGACTGACAA TTATGACCAA TAAAATCAAA GGAAGAAAAA ACTAATTAAC
  ACTAACATAT CATTATGACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37581538	NES09079555	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	T	T	T	C	T	T	C		C		T	T	C		T
ss45252130	mCV22318671	ABI	CRAMUS_MOUSE	f	SNP	T	T	C						T
ss147079148	ENSMUSSNP4643674	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						T					C
ss320429675	CHEV_2_101480059	CHEVERUD	SCREENING_POP	f	SNP												C						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27362119					SNP	T	T	C	T	T	T	T	C	T	T	C	C	C	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37581538	NES09079555	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:101470247 () rs orientation: forward

Symbol	Name	Function Class
Rag1	recombination activating 1	mRNA-UTR
Rr561526	regulatory region 561526	within coordinates
Tssr25364	transcription start site region 25364	200 bp downstream
Tssr25365	transcription start site region 25365	324 bp downstream
Tssr25366	transcription start site region 25366	1365 bp downstream
Tssr25367	transcription start site region 25367	1661 bp downstream