rs27362118 SNP Detail

Summary

• ID
  rs27362118
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:101470321 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAGCCTAT TAGTTTGCAA
  ATGACAAAAC AGAGAGGGTT TTTAGGATAA TACTTAAGTG TGTGTATGTT TTTGACAACT
  AAATTACGAA TGTCTTCGAT GTGCTCCATG CAGAAAGCAA AGAAAATGGC TGCATCTTTC
  AATAGAAAGC ACTAAATTCA ATCCCTGCCT ATGCACCAAA CATGTGCCAT TTAGGATAAT
  R
  TCATTTTTGC ACACTTGACA ACTAAATTAC AAAGCTCTTT GATATACTGT GTATGAAGAC
  TGACAATTAT GACCAATAAA ATCAAAGGAA GAAAAAACTA ATTAACACTA ACATATCATT
  ATGACTCACT AGCAAATAAA ATCCCGTGGC TGCTCTTAAA TTGCTGGTGC CTGGCAAAAT
  ACTGAATTCC TAAGGACATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37581537	NES09079558	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	G	G	G		G	G	G	A		G		G	G	G		G
ss45234049	mCV22318672	ABI	CRAMUS_MOUSE	f	SNP	G	G	A					G		G
ss147079154	ENSMUSSNP4834301	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A							G					A
ss320429676	CHEV_2_101480133	CHEVERUD	SCREENING_POP	f	SNP													A						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27362118					SNP	G	G	A	G	G	G	G	G	G	G	G	A	A	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37581537	NES09079558	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:101470321 () rs orientation: forward

Symbol	Name	Function Class
Rag1	recombination activating 1	mRNA-UTR
Rr561526	regulatory region 561526	within coordinates
Tssr25364	transcription start site region 25364	126 bp downstream
Tssr25365	transcription start site region 25365	250 bp downstream
Tssr25366	transcription start site region 25366	1291 bp downstream
Tssr25367	transcription start site region 25367	1587 bp downstream