rs27362113 SNP Detail

Summary

• ID
  rs27362113
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:101470968 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATCGGGT ATTGATTATC
  CCTGTAACTT TGGGGATAAT CCAAAAAAAT CCAAAAATAA TAAAATATAA ATAAACAATG
  TACACATGTT CATTCCTCTA CTCTGTTATG AGTAGACCCC ATCTAAACTT AACAAATAGA
  AAAAGCACAG CACAGTCCTG CTACTAAAAT CTGCACACAC TGAAACTCAA CTGATCATAA
  K
  CAAAAGAATA ACACATTGCC AAAAGAGGAA GACTTTAGAA AGCCTGGACT TATTCAAACC
  ATGTTTCATA TAGAGAAAAT CTGACTGACG TTTTTAGCAA GGTATTAAAT CTGCTTTTGG
  GCAGTAAGAA AATGTGGACT TTAAAAATCT GTAACCTTGA GATTACATAG AAAAGCACTA
  AGGCTATAAA TGACTCTTAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37581532	NES09079570	PERLEGEN	MM_PANEL2	f	SNP		G	T	T	T	T		T	G		T		T	T	T		T
ss147079173	ENSMUSSNP645201	ENSEMBL	ENSEMBL_Sanger	f	SNP	T						T					G
ss320429680	CHEV_2_101480780	CHEVERUD	SCREENING_POP	f	SNP										G						T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27362113					SNP	T	G	T	T	T	T	T	T	G	G	T	G	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37581532	NES09079570	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:101470968 () rs orientation: forward

Symbol	Name	Function Class
Rag1	recombination activating 1	mRNA-UTR
Rr561526	regulatory region 561526	476 bp distal
Tssr25364	transcription start site region 25364	500 bp upstream
Tssr25365	transcription start site region 25365	387 bp upstream
Tssr25366	transcription start site region 25366	644 bp downstream
Tssr25367	transcription start site region 25367	940 bp downstream