rs27362110 SNP Detail

Summary

• ID
  rs27362110
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:101471086 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATCTAAAC TTAACAAATA
  GAAAAAGCAC AGCACAGTCC TGCTACTAAA ATCTGCACAC ACTGAAACTC AACTGATCAT
  AATCAAAAGA ATAACACATT GCCAAAAGAG GAAGACTTTA GAAAGCCTGG ACTTATTCAA
  ACCATGTTTC ATATAGAGAA AATCTGACTG ACGTTTTTAG CAAGGTATTA AATCTGCTTT
  K
  GGGCAGTAAG AAAATGTGGA CTTTAAAAAT CTGTAACCTT GAGATTACAT AGAAAAGCAC
  TAAGGCTATA AATGACTCTT AATTAAAAAG TAAAAATAAA CAACCAGAGC TGGCTCTAGA
  TAACTAAGCA AGCATGACTT TATTATACTT AATAGGTAGC TGTAGCTAAC AGGTGCATTC
  TCTAACTTCA TTATTGAAAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37581529	NES09079576	PERLEGEN	MM_PANEL2	f	SNP	T		G	T	T	T	T	T	T		G	T	T	G		T
ss147079188	ENSMUSSNP289039	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G					T
ss320429683	CHEV_2_101480898	CHEVERUD	SCREENING_POP	f	SNP										G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27362110					SNP	T	T	G	T	T	T	T	T	T	G	G	T	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37581529	NES09079576	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:101471086 () rs orientation: forward

Symbol	Name	Function Class
Rag1	recombination activating 1	mRNA-UTR
Rr561526	regulatory region 561526	594 bp distal
Tssr25364	transcription start site region 25364	618 bp upstream
Tssr25365	transcription start site region 25365	505 bp upstream
Tssr25366	transcription start site region 25366	526 bp downstream
Tssr25367	transcription start site region 25367	822 bp downstream