rs27362109 SNP Detail

Summary

• ID
  rs27362109
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:101471107 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAGCACA GCACAGTCCT
  GCTACTAAAA TCTGCACACA CTGAAACTCA ACTGATCATA ATCAAAAGAA TAACACATTG
  CCAAAAGAGG AAGACTTTAG AAAGCCTGGA CTTATTCAAA CCATGTTTCA TATAGAGAAA
  ATCTGACTGA CGTTTTTAGC AAGGTATTAA ATCTGCTTTT GGGCAGTAAG AAAATGTGGA
  Y
  TTTAAAAATC TGTAACCTTG AGATTACATA GAAAAGCACT AAGGCTATAA ATGACTCTTA
  ATTAAAAAGT AAAAATAAAC AACCAGAGCT GGCTCTAGAT AACTAAGCAA GCATGACTTT
  ATTATACTTA ATAGGTAGCT GTAGCTAACA GGTGCATTCT CTAACTTCAT TATTGAAAAA
  TTTATGACAC CAGATGACCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37581528	NES09079578	PERLEGEN	MM_PANEL2	f	SNP	C			C	C	C	C	C	C		T	C	C	T		C
ss147079193	ENSMUSSNP3149698	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T					C
ss320429684	CHEV_2_101480919	CHEVERUD	SCREENING_POP	f	SNP										T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27362109					SNP	C	C	T	C	C	C	C	C	C	T	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37581528	NES09079578	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:101471107 () rs orientation: forward

Symbol	Name	Function Class
Rag1	recombination activating 1	mRNA-UTR
Rr561526	regulatory region 561526	615 bp distal
Tssr25364	transcription start site region 25364	639 bp upstream
Tssr25365	transcription start site region 25365	526 bp upstream
Tssr25366	transcription start site region 25366	505 bp downstream
Tssr25367	transcription start site region 25367	801 bp downstream