rs27362108 SNP Detail

Summary

• ID
  rs27362108
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:101471230 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTCATAT AGAGAAAATC
  TGACTGACGT TTTTAGCAAG GTATTAAATC TGCTTTTGGG CAGTAAGAAA ATGTGGACTT
  TAAAAATCTG TAACCTTGAG ATTACATAGA AAAGCACTAA GGCTATAAAT GACTCTTAAT
  TAAAAAGTAA AAATAAACAA CCAGAGCTGG CTCTAGATAA CTAAGCAAGC ATGACTTTAT
  Y
  ATACTTAATA GGTAGCTGTA GCTAACAGGT GCATTCTCTA ACTTCATTAT TGAAAAATTT
  ATGACACCAG ATGACCTCCT AGACACTGAA GGTGACAATA CTGAGGCCAT TTAAACCTGG
  AAAAGGATGA TTTTCTGAAA CCTCTCTTGG TTTAATTTAT TTATGCATAA ATGTAGCAAC
  GAGAAAATGC ACTGAGATCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss37581527	NES09079582	PERLEGEN	MM_PANEL2	f	SNP		C	T	C	T		C	C
ss147079208	ENSMUSSNP222801	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C			T
ss320429687	CHEV_2_101481042	CHEVERUD	SCREENING_POP	f	SNP						C			T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs27362108					SNP	T	C	T	C	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37581527	NES09079582	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:101471230 () rs orientation: forward

Symbol	Name	Function Class
Rag1	recombination activating 1	mRNA-UTR
Rr561526	regulatory region 561526	738 bp distal
Tssr25364	transcription start site region 25364	762 bp upstream
Tssr25365	transcription start site region 25365	649 bp upstream
Tssr25366	transcription start site region 25366	382 bp downstream
Tssr25367	transcription start site region 25367	678 bp downstream