rs27362107 SNP Detail

Summary

• ID
  rs27362107
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:101471300 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTGGACTT TAAAAATCTG
  TAACCTTGAG ATTACATAGA AAAGCACTAA GGCTATAAAT GACTCTTAAT TAAAAAGTAA
  AAATAAACAA CCAGAGCTGG CTCTAGATAA CTAAGCAAGC ATGACTTTAT TATACTTAAT
  AGGTAGCTGT AGCTAACAGG TGCATTCTCT AACTTCATTA TTGAAAAATT TATGACACCA
  R
  ATGACCTCCT AGACACTGAA GGTGACAATA CTGAGGCCAT TTAAACCTGG AAAAGGATGA
  TTTTCTGAAA CCTCTCTTGG TTTAATTTAT TTATGCATAA ATGTAGCAAC GAGAAAATGC
  ACTGAGATCC CTTGGAAAGG CCACCACGTC CTACACATGT ACAGGGTTGT TAGAGAAACC
  TCAAAGGCTC CTTTAAATCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37581526	NES09079583	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	G	G	G	A	G	G	A		A	G	G	A		G
ss147079213	ENSMUSSNP4679911	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						G
ss320429688	CHEV_2_101481112	CHEVERUD	SCREENING_POP	f	SNP												A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27362107					SNP	G	G	A	G	G	G	G	A	G	G	A	A	A	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37581526	NES09079583	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:101471300 () rs orientation: forward

Symbol	Name	Function Class
Rag1	recombination activating 1	mRNA-UTR
Rr561526	regulatory region 561526	808 bp distal
Tssr25364	transcription start site region 25364	832 bp upstream
Tssr25365	transcription start site region 25365	719 bp upstream
Tssr25366	transcription start site region 25366	312 bp downstream
Tssr25367	transcription start site region 25367	608 bp downstream