rs27361763 SNP Detail

Summary

• ID
  rs27361763
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102378498 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCACTCAAT GTCATGTAGC
  TAGAAAGTGA AGCAAGGACT TGAACACAGG TCATTGAATG CTGAGTTCTC CCAGTCTCTT
  CAACTGCTCT TACCCATTCC CCTCCATGGA TGGAGGGTCT GCCATTCTTA CTAGCCCTGG
  CCTCCAGTGA AAAACCATAT CTCACTGAGT ACAGAAAGTA GAGGCCTGTG TCATGGTTCC
  W
  GTCTTTCCAA ACTTTCCTGA GAGCTGGTGT TCAACCTTCC TCAAATTGTC TATATCATCT
  TGTCCCTTCC AATTCCATGG TTTTCTCTCT GCTTCAGGCC TTCATGAGTA GTCTAGGGAG
  ATAGTCTTCT TGGGATTTTA CTTTTCGAAA TCATCAAAGC ACCCCAAAAC CTAGAGGATA
  AAATTTAGAA ACCCTGTCAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37577482	NES09063539	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	A	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27361763					SNP	T	T	T	T	T	A	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37577482	NES09063539	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102378498 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11977	CpG island 11977	1613 bp proximal
Pamr1	peptidase domain containing associated with muscle regeneration 1	1859 bp upstream
Rr561703	regulatory region 561703	1478 bp proximal
Tssr19094	transcription start site region 19094	1892 bp upstream
Tssr19095	transcription start site region 19095	1946 bp upstream
Tssr19096	transcription start site region 19096	1964 bp upstream
Tssr19097	transcription start site region 19097	1985 bp upstream