rs27361762 SNP Detail

Summary

• ID
  rs27361762
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102378597 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTCCATGG ATGGAGGGTC
  TGCCATTCTT ACTAGCCCTG GCCTCCAGTG AAAAACCATA TCTCACTGAG TACAGAAAGT
  AGAGGCCTGT GTCATGGTTC CTGTCTTTCC AAACTTTCCT GAGAGCTGGT GTTCAACCTT
  CCTCAAATTG TCTATATCAT CTTGTCCCTT CCAATTCCAT GGTTTTCTCT CTGCTTCAGG
  M
  CTTCATGAGT AGTCTAGGGA GATAGTCTTC TTGGGATTTT ACTTTTCGAA ATCATCAAAG
  CACCCCAAAA CCTAGAGGAT AAAATTTAGA AACCCTGTCA CACTCACATT ATGTTCTTGC
  TCATTGCCAA ACTCCACACA ATTCTCTTCA ATGGGTTCTC TCCCACTCTT TCTTTCAATT
  ACTTACCATC ACTCAATTTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37577481	NES09063540	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C		C	C		A
ss320438715	CHEV_2_102388409	CHEVERUD	SCREENING_POP	f	SNP									C			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27361762					SNP	C	C	C	C	C	C	C	C	C	C	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37577481	NES09063540	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102378597 () rs orientation: forward

Symbol	Name	Function Class
Pamr1	peptidase domain containing associated with muscle regeneration 1	1760 bp upstream
Rr561703	regulatory region 561703	1379 bp proximal
Tssr19094	transcription start site region 19094	1793 bp upstream
Tssr19095	transcription start site region 19095	1847 bp upstream
Tssr19096	transcription start site region 19096	1865 bp upstream
Tssr19097	transcription start site region 19097	1886 bp upstream