rs27361759 SNP Detail

Summary

• ID
  rs27361759
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102379739 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCGGGTCC TGCCTGTATG
  CTCTTGGGGA GTATCTTGTG CTGCCCCACC ATCATGAACT CAGATCAGGA TTTCCCAGTA
  GCCTGTGTGT GCAGTTGCTC AGAGCAGAAA AGGGGAAAGA AAGCGCTTGG AGGTAGAGCA
  GTGTTGAGAG GGGAGTGCAG GTGGGTTTAC TCTATCCTCC CATCGCCTGT TGGGGGAGGG
  M
  ATACTCGGCC TTATATGGAG GTGGGTGGCA ATTTTTAGGA GTATCTCCTT CTATGGATTT
  CAGGAAATAA ACTCTGGTCC TAGTGCTTGA ACAGTAAACA GCTCTGTCAT TCTGTTGGGC
  CCCAGGCCAC TCTTCTAATC TGTCTCTGTC TGCCTAATTT AGGTGACCAC AACCAATACC
  TGCCCCAGCC CCCCATTCCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37577478	NES09063467	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	A	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27361759					SNP	C	C	C	C	C	A	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37577478	NES09063467	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102379739 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11977	CpG island 11977	372 bp proximal
Pamr1	peptidase domain containing associated with muscle regeneration 1	618 bp upstream
Rr561703	regulatory region 561703	237 bp proximal
Rr561704	regulatory region 561704	1509 bp proximal
Tssr19094	transcription start site region 19094	651 bp upstream
Tssr19095	transcription start site region 19095	705 bp upstream
Tssr19096	transcription start site region 19096	723 bp upstream
Tssr19097	transcription start site region 19097	744 bp upstream