rs27361757 SNP Detail

Summary

• ID
  rs27361757
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102379970 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTTTAGGA GTATCTCCTT
  CTATGGATTT CAGGAAATAA ACTCTGGTCC TAGTGCTTGA ACAGTAAACA GCTCTGTCAT
  TCTGTTGGGC CCCAGGCCAC TCTTCTAATC TGTCTCTGTC TGCCTAATTT AGGTGACCAC
  AACCAATACC TGCCCCAGCC CCCCATTCCA GCCTTCCATG CCACCTTTCT CAGCCTCTTC
  Y
  ATAAGCCTCT CATCTCAGGT TCTAGTACCA TCCTGCCCTC TCAGCCTCCC ATCCCAGTGC
  CATGCTAGCC TCCTAGCCCA GCCTCCAATC CTCCTTTCTC CTCTCAGCTT TCTAGCTCAG
  GTGCGGGATG TTTGAATGAG CATCCTCCCT AGCCTCCTCT GAGAGGTCCC GCAGCCATTC
  CTACTTCTGG TCCCAGTCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37577476	NES09063469	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	T	C	C		C	C		C
ss147115279	ENSMUSSNP6175984	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						C
ss320438743	CHEV_2_102389782	CHEVERUD	SCREENING_POP	f	SNP										T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27361757					SNP	C	T	C	C	C	C	T	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37577476	NES09063469	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102379970 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11977	CpG island 11977	141 bp proximal
Pamr1	peptidase domain containing associated with muscle regeneration 1	387 bp upstream
Rr561703	regulatory region 561703	6 bp proximal
Rr561704	regulatory region 561704	1278 bp proximal
Tssr19094	transcription start site region 19094	420 bp upstream
Tssr19095	transcription start site region 19095	474 bp upstream
Tssr19096	transcription start site region 19096	492 bp upstream
Tssr19097	transcription start site region 19097	513 bp upstream