rs27361753 SNP Detail

Summary

• ID
  rs27361753
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102380230 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATGCTAGC CTCCTAGCCC
  AGCCTCCAAT CCTCCTTTCT CCTCTCAGCT TTCTAGCTCA GGTGCGGGAT GTTTGAATGA
  GCATCCTCCC TAGCCTCCTC TGAGAGGTCC CGCAGCCATT CCTACTTCTG GTCCCAGTCA
  GTGCTGCCTG CCACACATCT CTACCTTCAC TATCAACAAA GGTTGATCAC GGAAGTCCAG
  M
  GAGAAGGAGC GGGCTCTGGT ATCCCGCTGT CCCCCGTAGA TCGCTGTGCA CTGGCCTCCA
  GGCGTGGTCA CGACTCCCCG GGCCTCTCAA GGGTTAAGAG GAAAGCTTTG GGCTGACGTC
  GCTCTGGCCG AAGGTGGTTC CCCTAGCTGA GGGTGGGAGA GCCCGGCGGG CTGAAACCCG
  AGCTCTGTTT CAGCTGGAGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37577472	NES09063473	PERLEGEN	MM_PANEL2	f	SNP	C	A	C	C	C	C	C	C		A	C	C		C
ss147115298	ENSMUSSNP3404433	ENSEMBL	ENSEMBL_Sanger	f	SNP		A					C
ss320438748	CHEV_2_102390042	CHEVERUD	SCREENING_POP	f	SNP									A				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27361753					SNP	C	A	C	C	C	C	C	C	A	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37577472	NES09063473	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102380230 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11977	CpG island 11977	within coordinates
Pamr1	peptidase domain containing associated with muscle regeneration 1	127 bp upstream
Rr561703	regulatory region 561703	within coordinates
Rr561704	regulatory region 561704	1018 bp proximal
Tssr19094	transcription start site region 19094	160 bp upstream
Tssr19095	transcription start site region 19095	214 bp upstream
Tssr19096	transcription start site region 19096	232 bp upstream
Tssr19097	transcription start site region 19097	253 bp upstream