rs27361752 SNP Detail

Summary

• ID
  rs27361752
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102380299 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTGAATG AGCATCCTCC
  CTAGCCTCCT CTGAGAGGTC CCGCAGCCAT TCCTACTTCT GGTCCCAGTC AGTGCTGCCT
  GCCACACATC TCTACCTTCA CTATCAACAA AGGTTGATCA CGGAAGTCCA GCGAGAAGGA
  GCGGGCTCTG GTATCCCGCT GTCCCCCGTA GATCGCTGTG CACTGGCCTC CAGGCGTGGT
  Y
  ACGACTCCCC GGGCCTCTCA AGGGTTAAGA GGAAAGCTTT GGGCTGACGT CGCTCTGGCC
  GAAGGTGGTT CCCCTAGCTG AGGGTGGGAG AGCCCGGCGG GCTGAAACCC GAGCTCTGTT
  TCAGCTGGAG CTTGGGGAGG TCCCGGCAAG AGCAGAGCCC GCTGCCCTGT TCTCGCCTAG
  GCATCCCTCC AGTCACTCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37577471	NES09063474	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C		C	C	C		T
ss320438749	CHEV_2_102390111	CHEVERUD	SCREENING_POP	f	SNP										C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27361752					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37577471	NES09063474	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102380299 () rs orientation: forward

Symbol	Name	Function Class
Pamr1	peptidase domain containing associated with muscle regeneration 1	58 bp upstream
Rr561703	regulatory region 561703	within coordinates
Rr561704	regulatory region 561704	949 bp proximal
Tssr19094	transcription start site region 19094	91 bp upstream
Tssr19095	transcription start site region 19095	145 bp upstream
Tssr19096	transcription start site region 19096	163 bp upstream
Tssr19097	transcription start site region 19097	184 bp upstream