rs27361749 SNP Detail

Summary

• ID
  rs27361749
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:102380959 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAAACTATG TCTAAGCTAA
  AGAAGAGAGC TCTTGTGCTA TCTATCTATC TATCTATCTA TCTATCTATC TATCTATCTA
  TCTATCTATC TATCTATCTA TCTTTTTTTT TAAAGGACCA CATTCCCCTG GGAAGCCCAT
  TCCCTGTGAG TTACTGGCTC TGATTTGCAA AGTCAAAGTT TCCTGGGAAA GTAGTCCCGC
  R
  GGGTTGAAGA ACAGGGATTG GGTGGGCGTT TCTCCAATGA ACCCTGCTTG ATAAAGCTGT
  AAGGTGGGAA CTCTTTAAAG CAGACCCCCA GTACAGGAGC TCTGCTCGCT CAGAAAATAG
  CACACATCCT GGGGAAACTT AGAAGAAATG GGCAGTCTGT TTCTGGGTGT ACAGCGTTTG
  TTTTGAAAGA GTCCTGGCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37577468	NES09063452	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	A	A	A	A	A	A		G	A	A		A
ss147115319	ENSMUSSNP6926634	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						A
ss320438756	CHEV_2_102390771	CHEVERUD	SCREENING_POP	f	SNP											G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27361749					SNP	A	A	G	A	A	A	A	A	A	A	G	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37577468	NES09063452	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102380959 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11977	CpG island 11977			351 bp distal
Pamr1	peptidase domain containing associated with muscle regeneration 1			Intron
				Noncoding-Transcript-Variant
Rr561703	regulatory region 561703			592 bp distal
Rr561704	regulatory region 561704			289 bp proximal
Tssr19094	transcription start site region 19094			534 bp downstream
Tssr19095	transcription start site region 19095			501 bp downstream
Tssr19096	transcription start site region 19096			486 bp downstream
Tssr19097	transcription start site region 19097			446 bp downstream