rs27361723 SNP Detail

Summary

• ID
  rs27361723
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:102387526 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCATTAATA CCAGGATATC
  CTTACCCAAG TCATTTTAAC CTGGAGAAAA CTCAGTGCCT GCCAGACACC GTCAACCTGG
  GGTTGTGCCA TATAGAGTGA AGACACCTAT TTCTCTCACC CTTCAGCCTT GGGAGCCAAA
  TACCTGCTTT GATGAGGTCA TCTCCTCACC ACTGTGGGAG GCGGATGTGG AGAAAACAAA
  R
  AAATCAGCTT TAACCCTACA GGCTTGCTGT TCTCATTGCT GCCCTCAGAG GTTCTGGCTG
  TCTCAGAGGG CTGGGTTAGT GGTTTGGCAG CAAGTGTCTA CATAAGTAGA CGTCTGGTCA
  GCTGGTTTTG TGATTGAAAA ACCATGGCTA CCGCTGTTGC CAAAATGCAG TGAGGAACAT
  ATTCAGCCAA CTGCAGCTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	CAST/EiJ	LG/J	MOLF/EiJ	SM/J
ss37577442	NES09063373	PERLEGEN	MM_PANEL2	f	SNP	G	A		G
ss320438838	CHEV_2_102397338	CHEVERUD	SCREENING_POP	f	SNP			G		A
SNP Consensus Information
SNP					Consensus Type	A/J	CAST/EiJ	LG/J	MOLF/EiJ	SM/J
rs27361723					SNP	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37577442	NES09063373	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102387526 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pamr1	peptidase domain containing associated with muscle regeneration 1			Intron
				Noncoding-Transcript-Variant
Rr561705	regulatory region 561705			1757 bp proximal