rs27361720 SNP Detail

Summary

• ID
  rs27361720
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:102387847 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGGTTTTG TGATTGAAAA
  ACCATGGCTA CCGCTGTTGC CAAAATGCAG TGAGGAACAT ATTCAGCCAA CTGCAGCTCA
  CAGGGAGATT CAGTGATTTT CTTCATACCC CGAATGTTGG TTTGGGGGAA AAAAACAACC
  CAGCCCCTTA AATGCAAAAC CCCTGAGTGG AGGAAAACAT CTCAGGCCAA TCTACTTCAA
  Y
  TGATCCAACT GTTTGAGGAC TATTAGAAAC TAAAATACTG GCTTTTTCAA GCCCACTCTC
  CCTTCTCATT ACTTCAAAAG ATTTCACTAA AGGTGCCCAG TGACCACCCC TCCCCCTTGA
  CCATGAGATC CCTCTTCCAG AGTTAAAAAT AAAACCATGG AATGTCTTAG GTGTCTTAGT
  ACTTGGCACC TGAGCTTAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	CAST/EiJ	LG/J	MOLF/EiJ	SM/J
ss37577439	NES09063378	PERLEGEN	MM_PANEL2	f	SNP		C	T		C
ss147115618	ENSMUSSNP1253210	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss320438842	CHEV_2_102397659	CHEVERUD	SCREENING_POP	f	SNP				C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	CAST/EiJ	LG/J	MOLF/EiJ	SM/J
rs27361720					SNP	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37577439	NES09063378	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102387847 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pamr1	peptidase domain containing associated with muscle regeneration 1			Intron
				Noncoding-Transcript-Variant
Rr561705	regulatory region 561705			1436 bp proximal