rs27361719 SNP Detail

Summary

• ID
  rs27361719
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:102387983 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCCAGCCC CTTAAATGCA
  AAACCCCTGA GTGGAGGAAA ACATCTCAGG CCAATCTACT TCAATTGATC CAACTGTTTG
  AGGACTATTA GAAACTAAAA TACTGGCTTT TTCAAGCCCA CTCTCCCTTC TCATTACTTC
  AAAAGATTTC ACTAAAGGTG CCCAGTGACC ACCCCTCCCC CTTGACCATG AGATCCCTCT
  Y
  CCAGAGTTAA AAATAAAACC ATGGAATGTC TTAGGTGTCT TAGTACTTGG CACCTGAGCT
  TAGATTGTGG CTGGGAGCTT CGTTCTCATA TTTCCAACAT ATCCTTGTCT TACCTGAGTT
  TAAAGGAAGA TGTAGCTGTC AGCAAAGTAT CTGTGTTCAG GTCTTCTTGG CCTGGCTTTC
  TGCCACTAGG GTGTGTACGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	CAST/EiJ	LG/J	MOLF/EiJ	SM/J	WSB/EiJ
ss37577438	NES09063379	PERLEGEN	MM_PANEL2	f	SNP	T	C		T		C
ss320438843	CHEV_2_102397795	CHEVERUD	SCREENING_POP	f	SNP			T		C
SNP Consensus Information
SNP					Consensus Type	A/J	CAST/EiJ	LG/J	MOLF/EiJ	SM/J	WSB/EiJ
rs27361719					SNP	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37577438	NES09063379	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102387983 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pamr1	peptidase domain containing associated with muscle regeneration 1			Intron
				Noncoding-Transcript-Variant
Rr561705	regulatory region 561705			1300 bp proximal