rs27361716 SNP Detail

Summary

• ID
  rs27361716
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:102388165 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACCATGAG ATCCCTCTTC
  CAGAGTTAAA AATAAAACCA TGGAATGTCT TAGGTGTCTT AGTACTTGGC ACCTGAGCTT
  AGATTGTGGC TGGGAGCTTC GTTCTCATAT TTCCAACATA TCCTTGTCTT ACCTGAGTTT
  AAAGGAAGAT GTAGCTGTCA GCAAAGTATC TGTGTTCAGG TCTTCTTGGC CTGGCTTTCT
  R
  CCACTAGGGT GTGTACGGTT CTTTTCCAAA TGGTGCCTAG AATCTCTTCT GGGAAAGCTT
  GGCTCCCTTG GCTCATGTGT CAGAACATAA TACTAAGTGT CACAAGCCTT ATAGAAATGC
  GACACAAACT TCAATAGACA AAAATGTTCA GATTGGTGAC TGTGATGGAT CACTAGACTC
  CACAATAAAG TTGGAATTAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	CAST/EiJ	LG/J	MOLF/EiJ	SM/J	WSB/EiJ
ss37577435	NES09063382	PERLEGEN	MM_PANEL2	f	SNP	A	G		A		A
ss147115629	ENSMUSSNP999109	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss320438847	CHEV_2_102397977	CHEVERUD	SCREENING_POP	f	SNP			A		G
SNP Consensus Information
SNP					Consensus Type	A/J	CAST/EiJ	LG/J	MOLF/EiJ	SM/J	WSB/EiJ
rs27361716					SNP	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37577435	NES09063382	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102388165 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pamr1	peptidase domain containing associated with muscle regeneration 1			Intron
				Noncoding-Transcript-Variant
Rr561705	regulatory region 561705			1118 bp proximal