rs27361712 SNP Detail

Summary

• ID
  rs27361712
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:102389203 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCTACTAG TACTTGCTAA
  GATGTTGGAA GATTGCTACA GAAGATGATG CATCCATGGT CCTGTAAAAA AATCTGGCTA
  GCATTGAGCA GCATGCCATT CAAGTTGCTT TAAGCAATGT GACTGGCCTG GGATTGTTGG
  GCACTCTGGG GTGTGAATCT GATTAATGAA TACTCACACT GATCTGATAG TTCTGAGGAC
  Y
  GAGAAGCCTT GTGACTTGCC TTCTCAACTA GATGCAGCTC CTCTTTAGGA ACAACAGGAA
  AAAATCAAGC AACTTTTGAA TTTTGGGGAG TCCAAACTGG GTCCAAGGTC TACACTGGCC
  ACCACTACAA GATCCAACCC TCTTCTTTTC GTCCCCGGTC TCAAGTCATT TCCTCATCAT
  TTCTGGACGA GTTGACACAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	CAST/EiJ	MOLF/EiJ	WSB/EiJ
ss37577431	NES09063323	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	CAST/EiJ	MOLF/EiJ	WSB/EiJ
rs27361712					SNP	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37577431	NES09063323	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102389203 () rs orientation: forward

Symbol	Name	Function Class
Pamr1	peptidase domain containing associated with muscle regeneration 1	Intron
Rr561705	regulatory region 561705	80 bp proximal