rs27361711 SNP Detail

Summary

• ID
  rs27361711
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:102389331 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGATTGTT GGGCACTCTG
  GGGTGTGAAT CTGATTAATG AATACTCACA CTGATCTGAT AGTTCTGAGG ACTGAGAAGC
  CTTGTGACTT GCCTTCTCAA CTAGATGCAG CTCCTCTTTA GGAACAACAG GAAAAAATCA
  AGCAACTTTT GAATTTTGGG GAGTCCAAAC TGGGTCCAAG GTCTACACTG GCCACCACTA
  Y
  AAGATCCAAC CCTCTTCTTT TCGTCCCCGG TCTCAAGTCA TTTCCTCATC ATTTCTGGAC
  GAGTTGACAC ACAATGACAG ATTTGTACAG CCCAGAAGTA GTGTGGCTGT TTGCACTTGG
  GACATATTCC ATGGAGAGAG CACGTGCATC TCGGTGGTTC ACTGAGCCTT TGTTTATTAT
  TTCCGCGACC TTCTTTTTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	SM/J	WSB/EiJ
ss37577430	NES09063324	PERLEGEN	MM_PANEL2	f	SNP			C			T		C
ss45258377	mCV23730727	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss147115668	ENSMUSSNP2352527	ENSEMBL	ENSEMBL_Sanger	f	SNP	T			C
ss320438855	CHEV_2_102399143	CHEVERUD	SCREENING_POP	f	SNP					T		C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	SM/J	WSB/EiJ
rs27361711					SNP	T	C	C	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37577430	NES09063324	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102389331 () rs orientation: forward

Symbol	Name	Function Class
Pamr1	peptidase domain containing associated with muscle regeneration 1	Intron
Rr561705	regulatory region 561705	within coordinates