rs27361709 SNP Detail

Summary

• ID
  rs27361709
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:102389460 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAAAAATC AAGCAACTTT
  TGAATTTTGG GGAGTCCAAA CTGGGTCCAA GGTCTACACT GGCCACCACT ACAAGATCCA
  ACCCTCTTCT TTTCGTCCCC GGTCTCAAGT CATTTCCTCA TCATTTCTGG ACGAGTTGAC
  ACACAATGAC AGATTTGTAC AGCCCAGAAG TAGTGTGGCT GTTTGCACTT GGGACATATT
  Y
  CATGGAGAGA GCACGTGCAT CTCGGTGGTT CACTGAGCCT TTGTTTATTA TTTCCGCGAC
  CTTCTTTTTT CCCTTTACAA ATATTGTTCT TGTTGTCATG CAACGTGTTT TCTGTCTTGG
  CCCTCACATT GCCTGCCTCC TCTCTCGGCC CAGACGTGTT TCAGATGCAA TGACAACAGT
  GGCCGTGGGT GAGGAACAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	CAST/EiJ	LG/J	MOLF/EiJ	SM/J	WSB/EiJ
ss37577428	NES09063326	PERLEGEN	MM_PANEL2	f	SNP	T		C		T		C
ss45336031	mCV23730998	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss320438857	CHEV_2_102399272	CHEVERUD	SCREENING_POP	f	SNP				T		C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	CAST/EiJ	LG/J	MOLF/EiJ	SM/J	WSB/EiJ
rs27361709					SNP	T	C	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37577428	NES09063326	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102389460 () rs orientation: forward

Symbol	Name	Function Class
Pamr1	peptidase domain containing associated with muscle regeneration 1	Intron
Rr561705	regulatory region 561705	within coordinates