rs27361708 SNP Detail

Summary

• ID
  rs27361708
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:102389480 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAATTTTGG GGAGTCCAAA
  CTGGGTCCAA GGTCTACACT GGCCACCACT ACAAGATCCA ACCCTCTTCT TTTCGTCCCC
  GGTCTCAAGT CATTTCCTCA TCATTTCTGG ACGAGTTGAC ACACAATGAC AGATTTGTAC
  AGCCCAGAAG TAGTGTGGCT GTTTGCACTT GGGACATATT CCATGGAGAG AGCACGTGCA
  Y
  CTCGGTGGTT CACTGAGCCT TTGTTTATTA TTTCCGCGAC CTTCTTTTTT CCCTTTACAA
  ATATTGTTCT TGTTGTCATG CAACGTGTTT TCTGTCTTGG CCCTCACATT GCCTGCCTCC
  TCTCTCGGCC CAGACGTGTT TCAGATGCAA TGACAACAGT GGCCGTGGGT GAGGAACAAA
  AGCAGCTGTT CTCATAAAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	CAST/EiJ	MOLF/EiJ
ss37577427	NES09063327	PERLEGEN	MM_PANEL2	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	CAST/EiJ	MOLF/EiJ
rs27361708					SNP	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37577427	NES09063327	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102389480 () rs orientation: forward

Symbol	Name	Function Class
Pamr1	peptidase domain containing associated with muscle regeneration 1	Intron
Rr561705	regulatory region 561705	within coordinates