rs27361707 SNP Detail

Summary

• ID
  rs27361707
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:102389515 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACTGGCCA CCACTACAAG
  ATCCAACCCT CTTCTTTTCG TCCCCGGTCT CAAGTCATTT CCTCATCATT TCTGGACGAG
  TTGACACACA ATGACAGATT TGTACAGCCC AGAAGTAGTG TGGCTGTTTG CACTTGGGAC
  ATATTCCATG GAGAGAGCAC GTGCATCTCG GTGGTTCACT GAGCCTTTGT TTATTATTTC
  Y
  GCGACCTTCT TTTTTCCCTT TACAAATATT GTTCTTGTTG TCATGCAACG TGTTTTCTGT
  CTTGGCCCTC ACATTGCCTG CCTCCTCTCT CGGCCCAGAC GTGTTTCAGA TGCAATGACA
  ACAGTGGCCG TGGGTGAGGA ACAAAAGCAG CTGTTCTCAT AAAAGGCATC TTGTCTGAGC
  AGACTCGGGA ACACATGATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	CAST/EiJ	LG/J	MOLF/EiJ	SM/J	WSB/EiJ
ss37577426	NES09063328	PERLEGEN	MM_PANEL2	f	SNP	T	C		T		C
ss320438859	CHEV_2_102399327	CHEVERUD	SCREENING_POP	f	SNP			T		C
SNP Consensus Information
SNP					Consensus Type	A/J	CAST/EiJ	LG/J	MOLF/EiJ	SM/J	WSB/EiJ
rs27361707					SNP	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37577426	NES09063328	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102389515 () rs orientation: forward

Symbol	Name	Function Class
Pamr1	peptidase domain containing associated with muscle regeneration 1	Intron
Rr561705	regulatory region 561705	within coordinates