rs27358044 SNP Detail

Summary

• ID
  rs27358044
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:101865153 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAAGGCAA GTTATATGGA
  CGGCTATGAG TCAGACAAGG CGCAAGTGGG CGACCTAATT AAGAAGCCAG CGTGGTGACT
  CAGATGTGGT TAGAAGTCGA GGCACCGTCA CCAATTTATT ATCTCAATGC TGCTGTTGCT
  ACTGCTACTT CTGATGTGAG GCCATAGAGC ACGTCCGAAG CCTAAGCATC TCCAGGCAAA
  Y
  GGGGACGTGG CCTGAGTTTA TGGCATAATA AGGCATCTAA GGCATCTGGC CTTATGCTTT
  TTCTTTTCTT TCTTTTTTTT TTTTTTTTTT TTTTTGGTTT TTTGAAACAG GGTTTCTCTG
  TATAGCCCTG GCTGGCTGTC CTGAAACTCA CTTTGTAGAC CAAGCTGGTC TTGAACTCAG
  AAATCGGCCT GTCTCTGCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37579664	NES09066129	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C		C	C	C	C		C
ss320433799	CHEV_2_101874965	CHEVERUD	SCREENING_POP	f	SNP									C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27358044					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37579664	NES09066129	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:101865153 () rs orientation: forward

Symbol	Name	Function Class
Ldlrad3	low density lipoprotein receptor class A domain containing 3	Intron
Rr561613	regulatory region 561613	777 bp distal
Rr561614	regulatory region 561614	13 bp distal
Rr561615	regulatory region 561615	1613 bp proximal