rs27358043 SNP Detail

Summary

• ID
  rs27358043
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:101865186 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAAGGCGC AAGTGGGCGA
  CCTAATTAAG AAGCCAGCGT GGTGACTCAG ATGTGGTTAG AAGTCGAGGC ACCGTCACCA
  ATTTATTATC TCAATGCTGC TGTTGCTACT GCTACTTCTG ATGTGAGGCC ATAGAGCACG
  TCCGAAGCCT AAGCATCTCC AGGCAAACGG GGACGTGGCC TGAGTTTATG GCATAATAAG
  R
  CATCTAAGGC ATCTGGCCTT ATGCTTTTTC TTTTCTTTCT TTTTTTTTTT TTTTTTTTTT
  TTGGTTTTTT GAAACAGGGT TTCTCTGTAT AGCCCTGGCT GGCTGTCCTG AAACTCACTT
  TGTAGACCAA GCTGGTCTTG AACTCAGAAA TCGGCCTGTC TCTGCCTCCC AAGTGCTGGG
  ATTAAAGGCA CGAGCCACCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37579663	NES09066130	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	G	G	G		G	G	G		A	G	G	A		G
ss45383208	mCV25361132	ABI	CRAMUS_MOUSE	f	SNP		G	A					G		G
ss147097702	ENSMUSSNP4905739	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
ss320433800	CHEV_2_101874998	CHEVERUD	SCREENING_POP	f	SNP												A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27358043					SNP	G	G	A	G	G	G	G	G	G	G	G	A	A	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37579663	NES09066130	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:101865186 () rs orientation: forward

Symbol	Name	Function Class
Ldlrad3	low density lipoprotein receptor class A domain containing 3	Intron
Rr561613	regulatory region 561613	810 bp distal
Rr561614	regulatory region 561614	46 bp distal
Rr561615	regulatory region 561615	1580 bp proximal