rs27358040 SNP Detail

Summary

• ID
  rs27358040
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:101866170 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTGCTGAA CAAACTCAGG
  GCCATAAGCT ATGCAAGCAG TCAGTCTATC AACTGAGCTA CGTGTCCAGG CCCTGGCCTT
  TATTTTTAAA TGCAAATCTT TCTTTCAAAA CACAAAAGAA CTCTGCTTGG TATTAAGGAA
  TACAATCAGA TATAAAAATT TTCAGCAGTC ACCAACAGAG ATAATCACTA CCGACAGTCC
  R
  GTGTTTTTTT CCCTCTGGCT GGCCCCTTAA ATTTCTGTTT GCAGAGGGAA GCTCCCAGGA
  CACATTGTGT AAGCACTGGA CCTAGCTGTG GAATGGTTAC AAGTGTCCAA ATTATCTCAA
  CTATCCTATG TCCTTTATAT GTGAGTCCTT TGTGGACTGT GACTACACAG AGTTCTTTCT
  TCTTTCCAGT AGAAATTTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37579660	NES09066032	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27358040					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37579660	NES09066032	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:101866170 () rs orientation: forward

Symbol	Name	Function Class
Ldlrad3	low density lipoprotein receptor class A domain containing 3	Intron
Rr561613	regulatory region 561613	1794 bp distal
Rr561614	regulatory region 561614	1030 bp distal
Rr561615	regulatory region 561615	596 bp proximal
Rr561616	regulatory region 561616	1209 bp proximal