rs27358032 SNP Detail

Summary

• ID
  rs27358032
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:101867239 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTCAAAAAA GAAGTGGCTT TCTGTCAGAG
  ACTGACTGGG GACTACTGGA GAACACAGAA CAGGATCATG GAGCTGCTCT GCTAGCCACA
  AGATTTATGA GGCGTGGGAT TACCGTGCCC AGTAGGAAAA CACTACTCTA TCCACTGCAC
  R
  TCTCTCTAAG CCCATGGAGG GGCACAAAGA GGGGCTTCCC ACACCTGCAC ACTTCAATGC
  TAAGAGGAGG GAACAACCTG TGCTTGCTAT GTCACCAGAA GAAGCCCCTC ACGCCCAGCA
  GGGACCTCAG TGCACAGCTT ACACGCCCCC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37579652	NES09066040	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	G	G	G	G	G	G		A	G	G		G
ss147097757	ENSMUSSNP6408043	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						G
ss320433815	CHEV_2_101877051	CHEVERUD	SCREENING_POP	f	SNP											A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27358032					SNP	G	G	A	G	G	G	G	G	G	G	A	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37579652	NES09066040	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:101867239 () rs orientation: forward

Symbol	Name	Function Class
Ldlrad3	low density lipoprotein receptor class A domain containing 3	Intron
Rr561615	regulatory region 561615	within coordinates
Rr561616	regulatory region 561616	140 bp proximal