rs27358031 SNP Detail

Summary

• ID
  rs27358031
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:101867375 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAAGATTT ATGAGGCGTG
  GGATTACCGT GCCCAGTAGG AAAACACTAC TCTATCCACT GCACGTCTCT CTAAGCCCAT
  GGAGGGGCAC AAAGAGGGGC TTCCCACACC TGCACACTTC AATGCTAAGA GGAGGGAACA
  ACCTGTGCTT GCTATGTCAC CAGAAGAAGC CCCTCACGCC CAGCAGGGAC CTCAGTGCAC
  R
  GCTTACACGC CCCCCACTGG CCAGCTGAAG ACTCCGTTTC CCCTTTTCCA GAAGTTGATT
  TGTCTGCCTC TTCCATCGTC AGTGACTCCC CAATCTGGGC TAACAATAAT AATCTTATTA
  ATGATGACAG TAATAGCAAT TACCATCTGC TCAGGGCGCG CCGTGGGTCA CTCTGTGCAG
  AGGGGACTTT CATGTATTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37579651	NES09066041	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	A	A	A	G	A	A		G	A	A	G		A
ss147097772	ENSMUSSNP4408969	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						A
ss320433818	CHEV_2_101877187	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27358031					SNP	A	A	G	A	A	A	A	G	A	A	G	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37579651	NES09066041	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:101867375 () rs orientation: forward

Symbol	Name	Function Class
Ldlrad3	low density lipoprotein receptor class A domain containing 3	Intron
Rr561615	regulatory region 561615	within coordinates
Rr561616	regulatory region 561616	4 bp proximal
Rr561617	regulatory region 561617	1907 bp proximal