rs27358030 SNP Detail

Summary

• ID
  rs27358030
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:101867393 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGATTACC GTGCCCAGTA
  GGAAAACACT ACTCTATCCA CTGCACGTCT CTCTAAGCCC ATGGAGGGGC ACAAAGAGGG
  GCTTCCCACA CCTGCACACT TCAATGCTAA GAGGAGGGAA CAACCTGTGC TTGCTATGTC
  ACCAGAAGAA GCCCCTCACG CCCAGCAGGG ACCTCAGTGC ACAGCTTACA CGCCCCCCAC
  K
  GGCCAGCTGA AGACTCCGTT TCCCCTTTTC CAGAAGTTGA TTTGTCTGCC TCTTCCATCG
  TCAGTGACTC CCCAATCTGG GCTAACAATA ATAATCTTAT TAATGATGAC AGTAATAGCA
  ATTACCATCT GCTCAGGGCG CGCCGTGGGT CACTCTGTGC AGAGGGGACT TTCATGTATT
  AGTTAATTCA CTGCTTAGCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37579650	NES09066042	PERLEGEN	MM_PANEL2	f	SNP	T		G	T	T	T	T	T	T	T		G	T	T		T
ss147097778	ENSMUSSNP3047387	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G						T
ss320433819	CHEV_2_101877205	CHEVERUD	SCREENING_POP	f	SNP											G				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27358030					SNP	T	T	G	T	T	T	T	T	T	T	G	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37579650	NES09066042	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:101867393 () rs orientation: forward

Symbol	Name	Function Class
Ldlrad3	low density lipoprotein receptor class A domain containing 3	Intron
Rr561615	regulatory region 561615	within coordinates
Rr561616	regulatory region 561616	within coordinates
Rr561617	regulatory region 561617	1889 bp proximal