rs27358028 SNP Detail

Summary

• ID
  rs27358028
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:101867767 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTATTAGT TAATTCACTG
  CTTAGCAACT CTGTGCTTAT CTCTCTTTTA CAGATGGGAA ACGGAGGACA GAAAGAGGAA
  GTCTCCTGCC TACGGTCCCA CAATCGACAC AGGCAGTACA GCTGGGATCT GAACAGAGGC
  TCCAGCAGCC CATGCACAGA GCGCTTGCTC TCTGCTGCCT TTGTCTAAGA CACACGAGGA
  R
  GCAGGCACAC AGGTTCAACT GCAAAAGGTT CACGGTGAGG CAGGGCAGCC TGTGTGACCC
  AGGTGAGCAG GGCAGAGGTA GGAGCACCCG GAGAGGCCCT GAGGCAAGAG CATGGCGAGT
  CTGAGAAACA GAAAGGAGAT TTTTCGCTGT GGGAGAAGTG GAGGTCACAC GTAGCTGAGA
  GACTAAAAGG GCATTGTGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37579648	NES09065998	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27358028					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37579648	NES09065998	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:101867767 () rs orientation: forward

Symbol	Name	Function Class
Ldlrad3	low density lipoprotein receptor class A domain containing 3	Intron
Rr367252	regulatory region 367252	1990 bp upstream
Rr561615	regulatory region 561615	within coordinates
Rr561616	regulatory region 561616	367 bp distal
Rr561617	regulatory region 561617	1515 bp proximal
Rr561618	regulatory region 561618	1627 bp proximal