rs27358027 SNP Detail

Summary

• ID
  rs27358027
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:101867800 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTTATCTC TCTTTTACAG
  ATGGGAAACG GAGGACAGAA AGAGGAAGTC TCCTGCCTAC GGTCCCACAA TCGACACAGG
  CAGTACAGCT GGGATCTGAA CAGAGGCTCC AGCAGCCCAT GCACAGAGCG CTTGCTCTCT
  GCTGCCTTTG TCTAAGACAC ACGAGGAGGC AGGCACACAG GTTCAACTGC AAAAGGTTCA
  S
  GGTGAGGCAG GGCAGCCTGT GTGACCCAGG TGAGCAGGGC AGAGGTAGGA GCACCCGGAG
  AGGCCCTGAG GCAAGAGCAT GGCGAGTCTG AGAAACAGAA AGGAGATTTT TCGCTGTGGG
  AGAAGTGGAG GTCACACGTA GCTGAGAGAC TAAAAGGGCA TTGTGTAGTT CACAGTGAAA
  AGTACGGCCA CGGGGGCGGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37579647	NES09066000	PERLEGEN	MM_PANEL2	f	SNP	C	G	C	C	C	C	G	C	C		G	C	C	G		C
ss320433823	CHEV_2_101877612	CHEVERUD	SCREENING_POP	f	SNP										G					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27358027					SNP	C	G	C	C	C	C	G	C	C	G	G	C	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37579647	NES09066000	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:101867800 () rs orientation: forward

Symbol	Name	Function Class
Ldlrad3	low density lipoprotein receptor class A domain containing 3	Intron
Rr367252	regulatory region 367252	1957 bp upstream
Rr561615	regulatory region 561615	within coordinates
Rr561616	regulatory region 561616	400 bp distal
Rr561617	regulatory region 561617	1482 bp proximal
Rr561618	regulatory region 561618	1594 bp proximal