rs27358024 SNP Detail

Summary

• ID
  rs27358024
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:101868593 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTAAGTCC CTGGCTGCAT
  CTGTAAAACA GCAGCAATGA TATCCAACTC ATAAGGCTGT CATATTAGAA GATTTAAGGC
  CTCTTAGGAT AGTGCCAGGG TCACAGGAGG TCTTGCTTTT ACATTCCCTG GTAGACAGAC
  TGTGCCCCTA AACTTCAGGT TACCCCACAT ATTCATTTGG ATGTCTATTT GAGGGGAGGA
  R
  GTGAGCCTGA TAAGGGTAGA GCTGAGAAAC AGAAGGGATG AGGCAAAATT AATCTGTGAT
  CAATACTGCT TGTGGCCATT ATGGTGACAG GCAGCAGATA AACACATAAA TAGAACCGAA
  GACCAGCTAA CCCCGCCAGC TGTTGCCATC AGCCACTTTG CCCAATTACG CAGGCTGTCG
  CATAGCCTTC TATCATTAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37579644	NES09065967	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	G	G	G		G	G	G		A	G	G	A		G
ss45339695	mCV25361146	ABI	CRAMUS_MOUSE	f	SNP		A					G		G
ss147097807	ENSMUSSNP3589418	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							G
ss320433830	CHEV_2_101878405	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27358024					SNP	G	A	G	G	G	G	G	G	G	G	A	A	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37579644	NES09065967	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:101868593 () rs orientation: forward

Symbol	Name	Function Class
Ldlrad3	low density lipoprotein receptor class A domain containing 3	Intron
Rr367252	regulatory region 367252	1164 bp upstream
Rr561615	regulatory region 561615	599 bp distal
Rr561616	regulatory region 561616	1193 bp distal
Rr561617	regulatory region 561617	689 bp proximal
Rr561618	regulatory region 561618	801 bp proximal
Rr561619	regulatory region 561619	1392 bp proximal
Tssr19089	transcription start site region 19089	1347 bp upstream
Tssr19090	transcription start site region 19090	1368 bp upstream
Tssr19091	transcription start site region 19091	1398 bp upstream