rs27358023 SNP Detail

Summary

• ID
  rs27358023
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:101868599 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCCTGGCT GCATCTGTAA
  AACAGCAGCA ATGATATCCA ACTCATAAGG CTGTCATATT AGAAGATTTA AGGCCTCTTA
  GGATAGTGCC AGGGTCACAG GAGGTCTTGC TTTTACATTC CCTGGTAGAC AGACTGTGCC
  CCTAAACTTC AGGTTACCCC ACATATTCAT TTGGATGTCT ATTTGAGGGG AGGAGGTGAG
  M
  CTGATAAGGG TAGAGCTGAG AAACAGAAGG GATGAGGCAA AATTAATCTG TGATCAATAC
  TGCTTGTGGC CATTATGGTG ACAGGCAGCA GATAAACACA TAAATAGAAC CGAAGACCAG
  CTAACCCCGC CAGCTGTTGC CATCAGCCAC TTTGCCCAAT TACGCAGGCT GTCGCATAGC
  CTTCTATCAT TAGGCACTCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37579643	NES09065968	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27358023					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37579643	NES09065968	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:101868599 () rs orientation: forward

Symbol	Name	Function Class
Ldlrad3	low density lipoprotein receptor class A domain containing 3	Intron
Rr367252	regulatory region 367252	1158 bp upstream
Rr561615	regulatory region 561615	605 bp distal
Rr561616	regulatory region 561616	1199 bp distal
Rr561617	regulatory region 561617	683 bp proximal
Rr561618	regulatory region 561618	795 bp proximal
Rr561619	regulatory region 561619	1386 bp proximal
Tssr19089	transcription start site region 19089	1341 bp upstream
Tssr19090	transcription start site region 19090	1362 bp upstream
Tssr19091	transcription start site region 19091	1392 bp upstream