rs27358020 SNP Detail

Summary

• ID
  rs27358020
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:101868727 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGACTGTG CCCCTAAACT
  TCAGGTTACC CCACATATTC ATTTGGATGT CTATTTGAGG GGAGGAGGTG AGCCTGATAA
  GGGTAGAGCT GAGAAACAGA AGGGATGAGG CAAAATTAAT CTGTGATCAA TACTGCTTGT
  GGCCATTATG GTGACAGGCA GCAGATAAAC ACATAAATAG AACCGAAGAC CAGCTAACCC
  Y
  GCCAGCTGTT GCCATCAGCC ACTTTGCCCA ATTACGCAGG CTGTCGCATA GCCTTCTATC
  ATTAGGCACT CAGTGACATT TTATTTGTGG CTGTCCTCCT CCCTCCCTAT TGTATTTAGT
  CGGCTTTCAT CTGGGAAGGT CTAGCTAGCC TCACTCGAGG CTCTGACTTG CGGTAATTTA
  GAGTTAAGCA TTATTTTATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37579640	NES09065971	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27358020					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37579640	NES09065971	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:101868727 () rs orientation: forward

Symbol	Name	Function Class
Ldlrad3	low density lipoprotein receptor class A domain containing 3	Intron
Rr367252	regulatory region 367252	1030 bp upstream
Rr561615	regulatory region 561615	733 bp distal
Rr561616	regulatory region 561616	1327 bp distal
Rr561617	regulatory region 561617	555 bp proximal
Rr561618	regulatory region 561618	667 bp proximal
Rr561619	regulatory region 561619	1258 bp proximal
Tssr19089	transcription start site region 19089	1213 bp upstream
Tssr19090	transcription start site region 19090	1234 bp upstream
Tssr19091	transcription start site region 19091	1264 bp upstream