rs27358016 SNP Detail

Summary

• ID
  rs27358016
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:101869564 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGTTCTTT TAACCACTGA
  GCCATCTCTC GAGCCCCAGT TTTTCTTACT AGAAACAGAG TTATTTCCTA TTTCCACACC
  CCACTAGGCT AGGGCTTGAC CACATGACTT GGCTTAGCCA AAGCATCTGT GGAATATGGT
  ATGAGCAGAA AGTTAAGACA TTCTTGAGCC AGCGTGCATA CCTATCACTC TCCAAAGATG
  S
  ACAGTGATAC AGCGTGGAGG CAATGGAGGT AGGACAGAGC TGAGCCCGGT TTACAGACTG
  GAGCTACTTG TGGCAGAAAG GAGCCCTGCT ACAGACTGGG TGCAACAGGC TGATAAAACA
  TATACTAACA CCCATTGGGG CTAGGAGTCC TAGGTCCTGC GTTCTATTCC CAGCAACCCC
  TCCCTTACTC AAAAGAGTAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37579636	NES09065944	PERLEGEN	MM_PANEL2	f	SNP	G	C	G	G	G	G	G	G		C	G	G	C		G
ss147097827	ENSMUSSNP5629932	ENSEMBL	ENSEMBL_Sanger	f	SNP		C					G
ss320433836	CHEV_2_101879376	CHEVERUD	SCREENING_POP	f	SNP									C					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27358016					SNP	G	C	G	G	G	G	G	G	C	C	G	G	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37579636	NES09065944	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:101869564 () rs orientation: forward

Symbol	Name	Function Class
Ldlrad3	low density lipoprotein receptor class A domain containing 3	Intron
Rr367252	regulatory region 367252	193 bp upstream
Rr561615	regulatory region 561615	1570 bp distal
Rr561617	regulatory region 561617	261 bp distal
Rr561618	regulatory region 561618	within coordinates
Rr561619	regulatory region 561619	421 bp proximal
Tssr19089	transcription start site region 19089	376 bp upstream
Tssr19090	transcription start site region 19090	397 bp upstream
Tssr19091	transcription start site region 19091	427 bp upstream