rs27358015 SNP Detail

Summary

• ID
  rs27358015
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:101869666 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGACTTGG CTTAGCCAAA
  GCATCTGTGG AATATGGTAT GAGCAGAAAG TTAAGACATT CTTGAGCCAG CGTGCATACC
  TATCACTCTC CAAAGATGGA CAGTGATACA GCGTGGAGGC AATGGAGGTA GGACAGAGCT
  GAGCCCGGTT TACAGACTGG AGCTACTTGT GGCAGAAAGG AGCCCTGCTA CAGACTGGGT
  R
  CAACAGGCTG ATAAAACATA TACTAACACC CATTGGGGCT AGGAGTCCTA GGTCCTGCGT
  TCTATTCCCA GCAACCCCTC CCTTACTCAA AAGAGTAAAG AAAACAGAAA GGGGAAGCAA
  GTGCCTAGTG GTATGTGCTG CATATGGCCT GCCTGCCTGC CTGCCTGCCC ACTCTGCTAT
  GGGGTGGGGT GTAAGGAGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37579635	NES09065945	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	G	G	G	A	G	G		A	G	G	A		G
ss147097847	ENSMUSSNP1345320	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						G
ss320433838	CHEV_2_101879478	CHEVERUD	SCREENING_POP	f	SNP										A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27358015					SNP	G	A	G	G	G	G	A	G	G	A	A	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37579635	NES09065945	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:101869666 () rs orientation: forward

Symbol	Name	Function Class
Ldlrad3	low density lipoprotein receptor class A domain containing 3	Intron
Rr367252	regulatory region 367252	91 bp upstream
Rr561615	regulatory region 561615	1672 bp distal
Rr561617	regulatory region 561617	363 bp distal
Rr561618	regulatory region 561618	within coordinates
Rr561619	regulatory region 561619	319 bp proximal
Tssr19089	transcription start site region 19089	274 bp upstream
Tssr19090	transcription start site region 19090	295 bp upstream
Tssr19091	transcription start site region 19091	325 bp upstream