rs27358013 SNP Detail

Summary

• ID
  rs27358013
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:101869792 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTAGGACAG AGCTGAGCCC
  GGTTTACAGA CTGGAGCTAC TTGTGGCAGA AAGGAGCCCT GCTACAGACT GGGTGCAACA
  GGCTGATAAA ACATATACTA ACACCCATTG GGGCTAGGAG TCCTAGGTCC TGCGTTCTAT
  TCCCAGCAAC CCCTCCCTTA CTCAAAAGAG TAAAGAAAAC AGAAAGGGGA AGCAAGTGCC
  Y
  AGTGGTATGT GCTGCATATG GCCTGCCTGC CTGCCTGCCT GCCCACTCTG CTATGGGGTG
  GGGTGTAAGG AGAAGCAGCT GGGCAGGAAA TGTTTTGTTC ACCCATCACT TTCACTGGGT
  TATGGGTGTC TCTGTCTGGG GCTGGATCAC CTGCATCTAA GCTGCTTCCT GCTTAACAAT
  AGTCTTCACA ACAGCAGCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37579633	NES09065947	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	T	T	T	T	T		C	T	T	C		T
ss147097862	ENSMUSSNP3639434	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						T
ss320433840	CHEV_2_101879604	CHEVERUD	SCREENING_POP	f	SNP										C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27358013					SNP	T	C	T	T	T	T	T	T	T	C	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37579633	NES09065947	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:101869792 () rs orientation: forward

Symbol	Name	Function Class
Ldlrad3	low density lipoprotein receptor class A domain containing 3	Intron
Rr367252	regulatory region 367252	within coordinates
Rr561615	regulatory region 561615	1798 bp distal
Rr561617	regulatory region 561617	489 bp distal
Rr561618	regulatory region 561618	within coordinates
Rr561619	regulatory region 561619	193 bp proximal
Tssr19089	transcription start site region 19089	148 bp upstream
Tssr19090	transcription start site region 19090	169 bp upstream
Tssr19091	transcription start site region 19091	199 bp upstream