rs27358008 SNP Detail

Summary

• ID
  rs27358008
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:101870083 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTTGTTC ACCCATCACT
  TTCACTGGGT TATGGGTGTC TCTGTCTGGG GCTGGATCAC CTGCATCTAA GCTGCTTCCT
  GCTTAACAAT AGTCTTCACA ACAGCAGCAA GCAAGCACAC TACAACGAAT GACTGCTGGG
  ATGTGTTACA GGACCTACTC TACGGTCAGG TCAGTCTCCT TACCCTTATT TCAACAGTCA
  Y
  AATGAAAAAT GGGACAAGTC TAGTTCCCAT TTTAAAGAGA GACTGAAGTA TGGGACTGTT
  CCCCCTTGAG TTATAAACAG AGCTGAATTG GGTCCCCAAC CCCACGTTGA GCACCATTGC
  CTTGACAGCT ACTCCCAGAC TCCGGATGGA TTTGGCAAAA GGTTCAACCC AACCCTTGCT
  TTCAACATCA TCTTATAAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37579628	NES09065953	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	C	C	T	C	C		T	C	C	T		C
ss147097877	ENSMUSSNP1916218	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						C
ss320433842	CHEV_2_101879895	CHEVERUD	SCREENING_POP	f	SNP										T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27358008					SNP	C	T	C	C	C	C	T	C	C	T	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37579628	NES09065953	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:101870083 () rs orientation: forward

Symbol	Name	Function Class
Ldlrad3	low density lipoprotein receptor class A domain containing 3	Intron
Rr367252	regulatory region 367252	57 bp downstream
Rr561617	regulatory region 561617	780 bp distal
Rr561618	regulatory region 561618	99 bp distal
Rr561619	regulatory region 561619	within coordinates
Tssr19089	transcription start site region 19089	141 bp downstream
Tssr19090	transcription start site region 19090	102 bp downstream
Tssr19091	transcription start site region 19091	79 bp downstream