rs27358006 SNP Detail

Summary

• ID
  rs27358006
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:101870335 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGACTGTTC CCCCTTGAGT
  TATAAACAGA GCTGAATTGG GTCCCCAACC CCACGTTGAG CACCATTGCC TTGACAGCTA
  CTCCCAGACT CCGGATGGAT TTGGCAAAAG GTTCAACCCA ACCCTTGCTT TCAACATCAT
  CTTATAAGCC TGTACTTTCC TGTGTGCCCT TCCCACCCAA ACCAGGCTGC AAGATACTGG
  S
  ATGCATGGCA GGTACTTTGT CCAGCAGTAG CTGGGGGCTT AGCTGAGTCA CAGAGTAAGG
  CTCTGTCATC TGCTTAATGG CTTTACACAA GTCCCATCAT GTCCCTACAG CTCATTTTCC
  CCCTCTATAA ATAGAGGGGT CTTAGTGATA AGAATGGCTT CCTTAGAAGC TTACAGTGTG
  TGTGTGTGTG TGTGTGTGTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37579626	NES09065955	PERLEGEN	MM_PANEL2	f	SNP	G	C	G	G	G	G	C	G	G		C	G	G	G		G
ss320433844	CHEV_2_101880147	CHEVERUD	SCREENING_POP	f	SNP										C					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27358006					SNP	G	C	G	G	G	G	C	G	G	C	C	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37579626	NES09065955	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:101870335 () rs orientation: forward

Symbol	Name	Function Class
Ldlrad3	low density lipoprotein receptor class A domain containing 3	Intron
Rr367252	regulatory region 367252	309 bp downstream
Rr561617	regulatory region 561617	1032 bp distal
Rr561618	regulatory region 561618	351 bp distal
Rr561619	regulatory region 561619	within coordinates
Tssr19089	transcription start site region 19089	393 bp downstream
Tssr19090	transcription start site region 19090	354 bp downstream
Tssr19091	transcription start site region 19091	331 bp downstream