rs27354479 SNP Detail

Summary

• ID
  rs27354479
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:159572780 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGGATTCT ACCTGAGCCC
  CTTGGCACAA AGGATCTATT TCCCAACTGG TCTTATGAGA GAAAACCTTT GGCTTCTTTA
  AATGTGAACG GTTTGTTTAT TTGTTTTCAC CATCCTCTAA CTTCAGGTTT GCAAGACTAT
  CCGTGTTTTT CATTACAAAC ACAGCTTTAT TAGAGGTTAG CTCTCTTGAC ACCAGTGCAA
  Y
  CATTATGTGC CTTTATAGGC TAATGTGACT GTGACAGGAG TTTCTTATGC TTATTAGGAC
  TTCATATTTA TGAAAATTGC ACTTATTAGC ATTGTCTCTA GATCTGGTTA TTTAATATGT
  TAAGGATTTT TGAAATATTT TGATAACCAT GCTTAATGGG AATTGCTTGT TTTGCGATTC
  CCATGAATGA AATTTATGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	NZW/LacJ	WSB/EiJ
ss37536304	NES08901303	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	NZW/LacJ	WSB/EiJ
rs27354479					SNP	T	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37536304	NES08901303	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:159572780 () rs orientation: forward

Symbol	Name	Function Class
Gm75570	predicted gene, 75570	355 bp upstream
Rr568937	regulatory region 568937	1436 bp proximal