rs27354477 SNP Detail

Summary

• ID
  rs27354477
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:159572945 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTATTAGAG GTTAGCTCTC
  TTGACACCAG TGCAATCATT ATGTGCCTTT ATAGGCTAAT GTGACTGTGA CAGGAGTTTC
  TTATGCTTAT TAGGACTTCA TATTTATGAA AATTGCACTT ATTAGCATTG TCTCTAGATC
  TGGTTATTTA ATATGTTAAG GATTTTTGAA ATATTTTGAT AACCATGCTT AATGGGAATT
  K
  CTTGTTTTGC GATTCCCATG AATGAAATTT ATGCATTAAA ATCAGCAATC TGAGGACTGG
  TGATCACTGC ATTTTGTTGA GTTTGCACTC TACCTTAAAT CATCTCTGCT CTTGTCCTAT
  GTTCCTCCCT AGCAGCTTTG CAAGCAAAAT ACCCTTAAGG GATGAAGGTC ACTACTCTTT
  CTCCAGCTCA TATGGCTGAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37536302	NES08901305	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27354477					SNP	G	G	G	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37536302	NES08901305	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:159572945 () rs orientation: forward

Symbol	Name	Function Class
Gm75570	predicted gene, 75570	520 bp upstream
Rr568937	regulatory region 568937	1271 bp proximal