rs27354476 SNP Detail

Summary

• ID
  rs27354476
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:159573016 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAGTTTCT TATGCTTATT
  AGGACTTCAT ATTTATGAAA ATTGCACTTA TTAGCATTGT CTCTAGATCT GGTTATTTAA
  TATGTTAAGG ATTTTTGAAA TATTTTGATA ACCATGCTTA ATGGGAATTG CTTGTTTTGC
  GATTCCCATG AATGAAATTT ATGCATTAAA ATCAGCAATC TGAGGACTGG TGATCACTGC
  W
  TTTTGTTGAG TTTGCACTCT ACCTTAAATC ATCTCTGCTC TTGTCCTATG TTCCTCCCTA
  GCAGCTTTGC AAGCAAAATA CCCTTAAGGG ATGAAGGTCA CTACTCTTTC TCCAGCTCAT
  ATGGCTGACG TCTCCATGGG GAGCATGTAG TATGACCAGG GCTTGGAAAC CATGCAAGAA
  TTCCCTGGCC ACAATTCCTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37536301	NES08901307	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	T	T	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27354476					SNP	A	A	A	A	T	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37536301	NES08901307	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:159573016 () rs orientation: forward

Symbol	Name	Function Class
Gm75570	predicted gene, 75570	591 bp upstream
Rr568937	regulatory region 568937	1200 bp proximal