rs27354468 SNP Detail

Summary

• ID
  rs27354468
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:159573862 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAAACATAT CACATTTTAG
  TTAATCACAG TGCTCCAATC TTAGACTTTT CAGGTAGCCT TTGGTACACA TCTGTATGGC
  TCATACTACA CATATATTCA TTGAAGTTAT TTCAGGCAAC ATGTGATCTC ACACACACAC
  ACATACACAC ATCTATGATG GGATCCATAG AAGAATATTG AACTATAGGG GCTTTAGATT
  M
  GGTGTTGGCC TTTGGAGATA TGTGTAGAGG GACCATGAAA CTGGGAGGCA GAGAAAACTA
  ACAACGTAAG GCCTCCAATC TAAAGACAGA GTCCACTAAT CCTGAGTTGC ACTTCTGGCA
  CGGGACGGTG GCCCTCCCAC TTCTCAACCG GGGGATTCTT TGCTACCTGC CTGCCCACCC
  AAGGGCCCAG CCTCAGAATA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	NZW/LacJ	WSB/EiJ
ss37536293	NES08901316	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	A	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	NZW/LacJ	WSB/EiJ
rs27354468					SNP	C	C	C	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37536293	NES08901316	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:159573862 () rs orientation: forward

Symbol	Name	Function Class
Gm75570	predicted gene, 75570	1437 bp upstream
Rr568937	regulatory region 568937	354 bp proximal