rs27351804 SNP Detail

Summary

• ID
  rs27351804
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:160063329 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGAGGGAG GGAGGAAGGG
  AGGGAGAGGG ATGGGGAGAG AGAGAGAAGA AGAAGAGAGA AAGGGGGACC CAAAGAATCA
  CTGGAGAACT AACTGAGAAA ATATGATTCC TAATGGGACA GAAGGAAAAA CTAGCACAGT
  AAAGAAAAGG AGGGGAGGGG AAAGTTGGGG TCAAACACAA ATCAAGATTG TCAGAAACAA
  R
  ACCGCAGTGC TGAATGCTGG CCAGATAGAG TGGGTACGAG AAATAGGGGG ATAAATCAGG
  GGTGGGCAGA TGGCTCAGTA CTCGAAGTGC TTGCTGTGCA AGAACGAAGT CCTGAGTTTG
  AATCCCCCTA CATTCACATG AAAATCTGGG CTCAGCAACA TGTACCTGTA AGCCTAGGGC
  TGAGGAGCAG AGACAGGTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37534330	NES08893225	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27351804					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37534330	NES08893225	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:160063329 () rs orientation: forward

Symbol	Name	Function Class
Rr568957	regulatory region 568957	399 bp distal
Rr568958	regulatory region 568958	415 bp proximal
Rr568959	regulatory region 568959	1837 bp proximal